Integration of Heterogeneous Bioinformatics Data through Web Services
نویسندگان
چکیده
With the advent of comparative genomics, an increasing amount of genomic data from different organisms is to be compared. This paper presents an approach to integrate bioinformatics data from various source databases using web services and a private registry. The goal is to construct an efficient framework that correctly integrates genomic databases via web services and thus allows genomic browsers to connect and clearly presents data based on user criteria. The experimental result shows that for most queries our system with private registry can return correct answers with dramatically less response time than one without.
منابع مشابه
Data Integration of Bioinformatics Database Based on Web Services
With the development of human genome projects ( HGP) in the world, a mass of genetic information is generated. Now there are hundreds of different kinds of important bioinformatics databases in the world. How to unify the bioinformatics database from different countries has become an important issue in Bioinformatics. In this paper, we present a data integration program based on Web Services of...
متن کاملBio Search Computing: Bioinformatics web service integration for data-driven answering of complex Life Science questions
An increasing number of bioinformatics web services are available that provide answer to specific data extraction and analysis needs. Yet, biomedical questions are often complex and regard many different aspects of an organism and its biomolecular entities. Their answer hence requires searching multiple heterogeneous data that frequently are inherently ordered, or are associated with ranked con...
متن کاملBringing Web 2.0 to bioinformatics
Enabling deft data integration from numerous, voluminous and heterogeneous data sources is a major bioinformatic challenge. Several approaches have been proposed to address this challenge, including data warehousing and federated databasing. Yet despite the rise of these approaches, integration of data from multiple sources remains problematic and toilsome. These two approaches follow a user-to...
متن کاملInterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data
SUMMARY InterMine is an open-source data warehouse system that facilitates the building of databases with complex data integration requirements and a need for a fast customizable query facility. Using InterMine, large biological databases can be created from a range of heterogeneous data sources, and the extensible data model allows for easy integration of new data types. The analysis tools inc...
متن کاملData partitioning enables the use of standard SOAP Web Services in genome-scale workflows
Biological databases and computational biology tools are provided by research groups around the world, and made accessible on the Web. Combining these resources is a common practice in bioinformatics, but integration of heterogeneous and often distributed tools and datasets can be challenging. To date, this challenge has been commonly addressed in a pragmatic way, by tedious and error-prone scr...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2009